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ayyucedemirbas/README.md

Hi there! 👋

✨ My name is Ayyuce. I am a doctoral researcher in the Bozdag Lab at the University of North Texas, pursuing my PhD in Computer Science and Engineering. My research interests are graph-based multi-omics integration, prediction of cancer subtypes, and drug discovery. I’m interested in staying up-to-date with the novel research and techniques in my field. I enjoy learning new things and am always looking for new challenges and exploring innovative approaches.

🚀 Technical Skills

🤖 Machine Learning: Convolutional Neural Networks, Graph Neural Networks, Vision Transformers, Transformers, Mamba, Multimodal Models, Large Language Models, Self-Supervised Learning, Contrastive Learning, Retrieval-Augmented Generation, Instruction Tuning, Reinforcement Learning from Human Feedback, Group Relative Policy Optimization

👩🏻‍💻 Programming Languages:

Python Java C# C C++ MATLAB

📚 Libraries and 🛠️ Tools:

TensorFlow PyTorch Scikit-learn OpenCV Hugging Face Transformers PEFT TRL Timm LangChain LlamaIndex Flask Gradio Streamlit Docker Kubernetes Google Cloud Platform Amazon SageMaker Git Git LFS JDK JUnit Maven Black Isort Sphinx Poetry arduino Linux Bash ZSH

🏆 Awards:

  • Google Developer Expert in Machine Learning

  • Microsoft Turkey Women Leaders of Technology

  • Google Developer Scholarship

  • Google Get Ahead Program Attendee (Ranked 16 in the Code Jam competition)

🔭 Research Publications:

  • Spatial-attention ConvMixer architecture for classification and detection of gastrointestinal diseases using the Kvasir dataset, 2024 (https://link.springer.com/article/10.1007/s13755-024-00290-x)

  • Generating Street Images with Bayesian Convolutional GAN (DOI: http://doi.org/10.13140/RG.2.2.26809.90723)

  • Generation of Synthetic Lung Cancer Histopathological Images using Generative Adversarial Networks, PyTorch Developer Day 2021

  • Comparing Tensor Processing Unit and CPU Performance for Image Classification, Journal of Computer Science and Technologies, 2020.

🔗 Connect with me:

Hugging Face Kaggle Google Scholar ORCID ResearchGate LeetCode Goodreads LinkedIn

Pinned Loading

  1. Llama-HINN Public

    Jupyter Notebook 2

  2. HINN_BRCA Public

    Python

  3. scAnalyzer Public

    HTML

  4. BRCA_Integrated_Gradients Public

    Jupyter Notebook

  5. STAR_NEON Public

    STAR RNA-seq aligner tool with NEON support

    C++

  6. OpenProblems_GRN Public

    Jupyter Notebook

1,450 contributions in the last year

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Activity overview

Loading A graph representing ayyucedemirbas's contributions from July 06, 2025 to July 11, 2026. The contributions are 75% commits, 13% issues, 12% pull requests, 0% code review.   Code review 13% Issues 12% Pull requests 75% Commits

Contribution activity

July 2026

Created 2 commits in 1 repository
16 contributions in private repositories Jul 1 – Jul 11
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