LOCUS       ON301144                1979 bp    RNA     linear   VRL 20-APR-2022
DEFINITION  Severe acute respiratory syndrome coronavirus 2 isolate
            SARS-CoV-2/human/FRA/IHUCOVID-005956_Illu1/2021 ORF1ab polyprotein,
            2'-O-ribose methyltransferase region, (ORF1ab) and surface
            glycoprotein (S) genes, partial cds.
ACCESSION   ON301144
VERSION     ON301144.1
KEYWORDS    .
SOURCE      Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Severe acute respiratory
            syndrome-related coronavirus.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Levasseur,A.
  TITLE     Genomic characterization and evolution of SARS-CoV-2 in France
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Levasseur,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2022) Aix Marseille University (AMU) - Faculty of
            Medicine - MEPHI - IHU - APHM, Aix Marseille University, 19-21
            Boulevard Jean Moulin, Marseille 13005, France
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Minimap v. V2; CLC Genomics v. V7
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
                     /mol_type="genomic RNA"
                     /isolate="SARS-CoV-2/human/FRA/IHUCOVID-005956_Illu1/2021"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /geo_loc_name="France"
                     /collection_date="2021-02-26"
     gene            <1..133
                     /gene="ORF1ab"
     CDS             <1..133
                     /gene="ORF1ab"
                     /codon_start=2
                     /product="ORF1ab polyprotein"
                     /protein_id="UPE85528.1"
                     /translation="GTAVMSLKEGQINDMILSLLSKGRLIIRENNRVVISSDVLVNN"
     mat_peptide     <1..130
                     /gene="ORF1ab"
                     /product="2'-O-ribose methyltransferase"
     gene            141..>1979
                     /gene="S"
     CDS             141..>1979
                     /gene="S"
                     /codon_start=1
                     /product="surface glycoprotein"
                     /protein_id="UPE85529.1"
                     /translation="MFVFLVLLPLVSSQCVNFTTRTQLPPAYTNSFTRGVYYPDKVFR
                     SSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFANPVLPFNDGVYFASTEKSNIIR
                     GWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
                     SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRGLPQ
                     GFSALEPLVDLPIGINITRFQTLHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKY
                     NENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCP
                     FGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNV
                     YADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLY
                     RLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYGFQPTYGVGYQPYRVV
                     VLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDI
                     ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVN"
ORIGIN      
        1 gggtactgct gttatgtctt taaaagaagg tcaaatcaat gatatgattt tatctcttct
       61 tagtaaaggt agacttataa ttagagaaaa caacagagtt gttatttcta gtgatgttct
      121 tgttaacaac taaacgaaca atgtttgttt ttcttgtttt attgccacta gtctctagtc
      181 agtgtgttaa ttttacaacc agaactcaat taccccctgc atacactaat tctttcacac
      241 gtggtgttta ttaccctgac aaagttttca gatcctcagt tttacattca actcaggact
      301 tgttcttacc tttcttttcc aatgttactt ggttccatgc tatacatgtc tctgggacca
      361 atggtactaa gaggtttgct aaccctgtcc taccatttaa tgatggtgtt tattttgctt
      421 ccactgagaa gtctaacata ataagaggct ggatttttgg tactacttta gattcgaaga
      481 cccagtccct acttattgtt aataacgcta ctaatgttgt tattaaagtc tgtgaatttc
      541 aattttgtaa tgatccattt ttgggtgttt attaccacaa aaacaacaaa agttggatgg
      601 aaagtgagtt cagagtttat tctagtgcga ataattgcac ttttgaatat gtctctcagc
      661 cttttcttat ggaccttgaa ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt
      721 ttaagaatat tgatggttat tttaaaatat attctaagca cacgcctatt aatttagtgc
      781 gtggtctccc tcagggtttt tcggctttag aaccattggt agatttgcca ataggtatta
      841 acatcactag gtttcaaact ttacatagaa gttatttgac tcctggtgat tcttcttcag
      901 gttggacagc tggtgctgca gcttattatg tgggttatct tcaacctagg acttttctat
      961 taaaatataa tgaaaatgga accattacag atgctgtaga ctgtgcactt gaccctctct
     1021 cagaaacaaa gtgtacgttg aaatccttca ctgtagaaaa aggaatctat caaacttcta
     1081 actttagagt ccaaccaaca gaatctattg ttagatttcc taatattaca aacttgtgcc
     1141 cttttggtga agtttttaac gccaccagat ttgcatctgt ttatgcttgg aacaggaaga
     1201 gaatcagcaa ctgtgttgct gattattctg tcctatataa ttccgcatca ttttccactt
     1261 ttaagtgtta tggagtgtct cctactaaat taaatgatct ctgctttact aatgtctatg
     1321 cagattcatt tgtaattaga ggtgatgaag tcagacaaat cgctccaggg caaactggaa
     1381 atattgctga ttataattat aaattaccag atgattttac aggctgcgtt atagcttgga
     1441 attctaacaa tcttgattct aaggttggtg gtaattataa ttacctgtat agattgttta
     1501 ggaagtctaa tctcaaacct tttgagagag atatttcaac tgaaatctat caggccggta
     1561 gcacaccttg taatggtgtt aaaggtttta attgttactt tcctttacaa tcatatggtt
     1621 tccaacccac ttatggtgtt ggttaccaac catacagagt agtagtactt tcttttgaac
     1681 ttctacatgc accagcaact gtttgtggac ctaaaaagtc tactaatttg gttaaaaaca
     1741 aatgtgtcaa tttcaacttc aatggtttaa caggcacagg tgttcttact gagtctaaca
     1801 aaaagtttct gcctttccaa caatttggca gagacattgc tgacactact gatgctgtcc
     1861 gtgatccaca gacacttgag attcttgaca ttacaccatg ttcttttggt ggtgtcagtg
     1921 ttataacacc aggaacaaat acttctaacc aggttgctgt tctttatcag ggtgttaac
//