LOCUS       WCKJ01000120            1163 bp    DNA     linear   BCT 24-DEC-2019
DEFINITION  Glaesserella parasuis strain H313 Scaffold120, whole genome shotgun
            sequence.
ACCESSION   WCKJ01000120 WCKJ01000000
VERSION     WCKJ01000120.1
DBLINK      BioProject: PRJNA576038
            BioSample: SAMN12920959
KEYWORDS    WGS.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Li,C., Yan,H., Wan,X. and Wang,G.
  TITLE     WGS characterization of a Glaesserella parasuis isolate
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Li,C., Yan,H., Wan,X. and Wang,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2019) School of Food Science and Engineering,
            South China University of Technology, Wushan Road, Guangzhou,
            Guangdong 510640, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 1.05
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.79x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/08/2019 13:28:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,413
            CDSs (total)                      :: 2,356
            Genes (coding)                    :: 2,189
            CDSs (with protein)               :: 2,189
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 10 of 167
            Pseudo Genes (frameshifted)       :: 76 of 167
            Pseudo Genes (incomplete)         :: 85 of 167
            Pseudo Genes (internal stop)      :: 28 of 167
            Pseudo Genes (multiple problems)  :: 30 of 167
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="Scaffold120"
                     /strain="H313"
                     /host="swine"
                     /db_xref="taxon:738"
                     /geo_loc_name="China"
                     /collection_date="2016"
     gene            <1..>434
                     /locus_tag="F9889_11700"
     CDS             <1..>434
                     /locus_tag="F9889_11700"
                     /inference="COORDINATES: protein motif:HMM:PF00509.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="MWQ00827.1"
                     /translation="GNPSCDLMLEGREWSYIVERPSAVNGLCYPGHVENLEELRSLFS
                     SARSYQRVQIFPDTIWNVSYDGTSTACSGSFYRSMRWLTRKNGDYPIQDAQYTNNQGK
                     NILFMWGINHPPADTTQRNLYTRTDTTTSVATEEVNRIFKPL"
     assembly_gap    435..454
                     /estimated_length=20
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <455..>1163
                     /locus_tag="F9889_11705"
     CDS             <455..>1163
                     /locus_tag="F9889_11705"
                     /inference="COORDINATES: protein motif:HMM:PF00509.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hemagglutinin"
                     /protein_id="MWQ00828.1"
                     /translation="RPLVNGLMGRIDYYWSVLKPGQTLRIKSDGNLIAPWYGHILSGE
                     SHGRILKTDLKRGSCTVQCQTEKGGLNTTLPFQNVSKYAFGNCSKYIGMKSLKLAVGL
                     RNVPSRSSRGLFGAIAGFIEGGWSGLVAGWYGFQHSNDQGVGMAADRDSTQKAIDKIT
                     SKVNNIVDKMNKQYEIIDHEFSEVETRLNMINNKIDDQIQDIWAYNAELLVLLENQKT
                     LDEHDANVNNLYNKVKRA"
ORIGIN      
        1 ggcaatcctt cttgtgatct aatgctggaa ggaagagaat ggtcctacat cgtcgagaga
       61 ccatcagctg ttaacggatt gtgttacccc gggcacgtag aaaatctaga agagctgagg
      121 tcacttttta gttctgctag gtcttatcaa agagtccaga ttttcccaga cacaatctgg
      181 aatgtgtctt atgatgggac aagcactgca tgctcaggtt cattctacag aagcatgaga
      241 tggctgacta gaaagaacgg cgattacccc attcaagacg cccaatacac aaataatcaa
      301 gggaagaaca ttcttttcat gtggggcata aatcacccac ccgccgatac aacgcagaga
      361 aatctgtaca cgagaaccga cacaacaacg agtgtggcaa cagaagaagt aaataggatc
      421 ttcaaaccat tgatnnnnnn nnnnnnnnnn nnnncaaggc ctcttgtcaa cggtttgatg
      481 ggaagaattg attattattg gtcggtattg aaaccgggtc aaacactgcg aataaaatct
      541 gatgggaatc taatagctcc atggtatgga cacattcttt caggagagag ccacggaaga
      601 attctgaaga ctgacttaaa aaggggtagc tgcacagtgc aatgtcagac agagaaagga
      661 ggcttaaaca caacattgcc attccaaaat gtaagtaagt atgcatttgg aaactgctca
      721 aaatacattg gcatgaagag tctcaaactt gcagttggtc tgaggaatgt gccttctaga
      781 tctagtagag gactattcgg ggccatagca gggtttatag agggaggttg gtcaggacta
      841 gttgctggtt ggtatgggtt ccagcattca aatgaccaag gggttggtat ggcagcagat
      901 agagactcaa cccaaaaggc aattgataaa ataacatcca aagtgaataa tatagtcgac
      961 aaaatgaaca agcaatatga aatcattgat catgaattca gtgaagtaga aactagactt
     1021 aacatgatca ataataagat tgatgatcaa atccaggata tatgggcata taatgcagaa
     1081 ttgctagttt tgcttgaaaa ccagaaaaca ctcgatgagc atgacgcaaa tgtaaacaat
     1141 ctatataata aagtaaagag ggc
//